A. I. Cuza University of Iaşi

Bioinformatics

Course nameBioinformatics CodeCS3209O1
Class Computer Science, 2006 - 2009 Package 4
Level Undergraduate Year 3 Semester 2 Status Optional
Hours per weekTotal hours per semesterTotal hours of individual workCreditsEvaluation typeTeaching language
CSLPr
2 2 0 0 48 0 5 E ro
Taught byAcademic and scientific title, name
Associate Professor, PhD, Liviu Ciortuz
Required courses
Objectives
  1. Notiuni fundamentale de biologie moleculara
  2. Modele Markov Ascunse (HMM)
  3. Alinieri de perechi de secvente ADN/proteine
  4. Alinieri de perechi de secvente ADN/proteine folosind HMM pereche
  5. Alinieri multiple de perechi de secvente ADN/proteine
  6. Alinieri multiple de perechi de secvente ADN/proteine folosind HMM profil
  7. Filogenetica; modele probabiliste
  8. Gramatici probabiliste independente de context (PCFG)
  9. Alinieri de secvente ARN folosind PCFG
  10. Identificare de motive in secvente genetice
General thematicsImplementari pentru algoritmii predati la curs si aplicatii ale lor Prezentare articole din domeniu
Seminary / Laboratory thematicsImplementari pentru algoritmii predati la curs si aplicatii ale lor Prezentare articole din domeniu
Teaching methodsSlide-uri pe video-proiector
Bibliography"Biological Sequence Analysis'', Durbin, Eddy, Krogh, Mitchison; Cambridge University Press, 1998 "An Introduction to Bioinformatics Algorithms", Neil Jones & Pavel Pevzner; MIT Press, 2004
EvaluationconditionsMinim 1.5 (din 4) puncte la laborator, minim 1.5 (din 4) puncte la examenul final
criterias
modes
formulaBaza (2 puncte) + laborator + examen final
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